Associate Professor · Bioinformatician
Prof. Jeongbin Park
A bioinformatician building tools for CRISPR design, spatial transcriptomics, and single-cell genomics — currently teaching and running a lab at School of Biomedical Convergence Engineering, Pusan National University.
Trained in physics (Pusan National University · Seoul National University) and biology (Heidelberg University), with postdoctoral research at DKFZ Heidelberg. Returned to Korea in 2022 to establish the Computational Omics Laboratory (COLab).
Publications
43
Citations
6,992
h-index
21
Research Interests
AI + Biology
Machine learning for omics and biomedical data analysis
- READRetro web: A user-friendly platform for predicting plant natural product biosynthesis - Molecules and Cells (2025) [cited: 3]
- READRetro: natural product biosynthesis predicting with retrieval-augmented dual-view retrosynthesis - New Phytologist (2024) [cited: 28]
Spatial Omics
Spatial transcriptomics, single-cell analysis, and cell-type inference
- Cell segmentation-free inference of cell types from in situ transcriptomics data - Nature Communications (2021) [cited: 155]
- Current computational methods for spatial transcriptomics in cancer biology - Advances in Cancer Research (2024)
- Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain - Scientific Reports (2023) [cited: 28]
- SpaceTx: A Roadmap for Benchmarking Spatial Transcriptomics Exploration of the Brain - arXiv (2023) [cited: 19]
CRISPR
Genome editing tool design, off-target analysis, and guide RNA databases
- Variant-aware Cas-OFFinder: web-based in silico variant-aware potential off-target site identification for genome editing applications - Nucleic Acids Research (2025) [cited: 10]
- Highly efficient CRISPR/Cas9-RNP mediated CaPAD1 editing in protoplasts of three pepper (Capsicum annuum L.) cultivars - Plant Signaling & Behavior (2024) [cited: 8]
- Web-based design and analysis tools for CRISPR base editing - BMC Bioinformatics (2018) [cited: 236]
- Response to “Unexpected mutations after CRISPR-Cas9 editing in vivo” - Nature Methods (2018) [cited: 49]
Contact
Email
[email protected]Office
Room #413, Kyung-Ahm Engineering Building, Busandaehak-ro 49, Mulgeum-eup, Yangsan-si, 50612, Republic of Korea
+82-51-510-8597